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This situation can be represented as a set of 5, 2 × 2 Latin squares. And the 12 machines are distinguished by nesting the i index within the h replicates. Here is a plot of the least squares means for Yield with all of the observations included. Above you have the least squares means that correspond exactly to the simple means from the earlier analysis.
ANOVA Display for the RCBD
Consider a factory setting where you are producing a product with 4 operators and 4 machines. Then you can randomly assign the specific operators to a row and the specific machines to a column. The treatment is one of four protocols for producing the product and our interest is in the average time needed to produce each product.
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7 - Incomplete Block Designs
This property has an impact on how we calculate means and sums of squares, and for this reason, we can not use the balanced ANOVA command in Minitab even though it looks perfectly balanced. We will see later that although it has the property of orthogonality, you still cannot use the balanced ANOVA command in Minitab because it is not complete. After calculating x, you could substitute the estimated data point and repeat your analysis. So you can analyze the resulting data, but now should reduce your error degrees of freedom by one. In any event, these are all approximate methods, i.e., using the best fitting or imputed point. Suppose that there are a treatments (factor levels) and b blocks.
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If you are changing one or the other of the row or column factors, using different machines or operators, then you are in Case 2. If both of the block factors have levels that differ across the replicates, then you are in Case 3. The third case, where the replicates are different factories, can also provide a comparison of the factories. The fact that you are replicating Latin Squares does allow you to estimate some interactions that you can't estimate from a single Latin Square. If we added a treatment by factory interaction term, for instance, this would be a meaningful term in the model, and would inform the researcher whether the same protocol is best (or not) for all the factories.
We give the treatment, then we later observe the effects of the treatment. This is followed by a period of time, often called a washout period, to allow any effects to go away or dissipate. This is followed by a second treatment, followed by an equal period of time, then the second observation. We let the row be the machines, the column be the operator, (just as before) and the Greek letter the day, (you could also think of this as the order in which it was produced).
An assumption that we make when using a Latin square design is that the three factors (treatments, and two nuisance factors) do not interact. If this assumption is violated, the Latin Square design error term will be inflated. The Latin Square Design gets its name from the fact that we can write it as a square with Latin letters to correspond to the treatments. The treatment factor levels are the Latin letters in the Latin square design. The number of rows and columns has to correspond to the number of treatment levels. So, if we have four treatments then we would need to have four rows and four columns in order to create a Latin square.
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Obviously, you don't have any carryover effects here because it is the first period. However, what if the treatment they were first given was a really bad treatment? In fact in this experiment the diet A consisted of only roughage, so, the cow's health might in fact deteriorate as a result of this treatment.

In the experiment we’re planning with the gummi bears, we’ll use blocks to account for data collected on different days. We’ll also use blocks to try to avoid a fatigue effect on the catapult. From doing this experiment with classes that I teach, I’m pretty confident that in 20 runs there won’t be noticeable fatigue.
Allocate you observations into blocks
However, this method of constructing a BIBD using all possible combinations, does not always work as we now demonstrate. If the number of combinations is too large then you need to find a subset - - not always easy to do. However, sometimes you can use Latin Squares to construct a BIBD. As an example, let's take any 3 columns from a 4 × 4 Latin Square design. This subset of columns from the whole Latin Square creates a BIBD. With our first cow, during the first period, we give it a treatment or diet and we measure the yield.
If both the machine and the operator have an effect on the time to produce, then by using a Latin Square Design this variation due to machine or operators will be effectively removed from the analysis. At a high level, blocking is used when you are designing a randomized experiment to determine how one or more treatments affect a given outcome. More specifically, blocking is used when you have one or more key variables that you need to ensure are similarly distributed within your different treatment groups. An alternate way of summarizing the design trials would be to use a 4x3 matrix whose 4 rows are the levels of the treatment X1 and whose columns are the 3 levels of the blocking variable X2. The cells in the matrix have indices that match the X1, X2 combinations above. Blocking is a technique used in design of experiments methodology to deal with the systematic differences to ensure that all the factors of interest and interactions between the factors can be assessed in the design.
The single design we looked at so far is the completely randomized design (CRD) where we only have a single factor. In the CRD setting we simply randomly assign the treatments to the available experimental units in our experiment. Ideally, experiments should be run by using completely randomized experimental units. However, often, there is not enough experimental units from one homogenous sample.
A nuisance factor is a factor that has some effect on the response, but is of no interest to the experimenter; however, the variability it transmits to the response needs to be minimized or explained. We will talk about treatment factors, which we are interested in, and blocking factors, which we are not interested in. We will try to account for these nuisance factors in our model and analysis. To address nuisance variables, researchers can employ different methods such as blocking or randomization. Blocking involves grouping experimental units based on levels of the nuisance variable to control for its influence. Randomization helps distribute the effects of nuisance variables evenly across treatment groups.
By blocking on sex, this source of variability is controlled, therefore, leading to greater interpretation of how the diet pills affect weight loss. In general, we are faced with a situation where the number of treatments is specified, and the block size, or number of experimental units per block (k) is given. This is usually a constraint given from the experimental situation. And then, the researcher must decide how many blocks are needed to run and how many replicates that provides in order to achieve the precision or the power that you want for the test.
In the 2k design of experiment, blocking technique is used when enough homogenous experimental units are not available. Latin Square Designs are probably not used as much as they should be - they are very efficient designs. In other words, these designs are used to simultaneously control (or eliminate) two sources of nuisance variability.
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